- name: freebayes test_freebayes
  command: nextflow run ./tests/modules/freebayes -entry test_freebayes -c ./tests/config/nextflow.config -c ./tests/modules/freebayes/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_bed
  command: nextflow run ./tests/modules/freebayes -entry test_freebayes_bed -c ./tests/config/nextflow.config -c ./tests/modules/freebayes/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_cram
  command: nextflow run ./tests/modules/freebayes -entry test_freebayes_cram -c ./tests/config/nextflow.config -c ./tests/modules/freebayes/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_somatic
  command: nextflow run ./tests/modules/freebayes -entry test_freebayes_somatic -c ./tests/config/nextflow.config -c ./tests/modules/freebayes/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_somatic_cram_intervals
  command: nextflow run ./tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c ./tests/config/nextflow.config -c ./tests/modules/freebayes/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz