- name: shovill with spades
  command: nextflow run ./tests/modules/shovill -entry test_shovill -c ./tests/config/nextflow.config -c ./tests/modules/shovill/nextflow.config
  tags:
    - shovill
  files:
    - path: output/shovill/contigs.gfa
      md5sum: 277af5d8ae8a0d2432db59a316226828
    - path: output/shovill/spades.fasta
      md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
    # MD5sum not reproducible (timestamp)
    - path: output/shovill/contigs.fa
    - path: output/shovill/shovill.corrections
    - path: output/shovill/shovill.log

- name: shovill with megahit
  command: nextflow run ./tests/modules/shovill -entry test_shovill_megahit -c ./tests/config/nextflow.config -c ./tests/modules/shovill/nextflow.config
  tags:
    - shovill
  files:
    - path: output/shovill/shovill.corrections
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    # MD5sum not reproducible (timestamp, contig order)
    - path: output/shovill/contigs.fa
    - path: output/shovill/contigs.fastg
    - path: output/shovill/megahit.fasta
    - path: output/shovill/shovill.log

- name: shovill with skesa
  command: nextflow run ./tests/modules/shovill -entry test_shovill_skesa -c ./tests/config/nextflow.config -c ./tests/modules/shovill/nextflow.config
  tags:
    - shovill
  files:
    - path: output/shovill/shovill.corrections
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/shovill/skesa.fasta
      md5sum: 8157837dbe8315922f588dafa7af5ef8
    # MD5sum not reproducible (timestamp)
    - path: output/shovill/contigs.fa
    - path: output/shovill/shovill.log

- name: shovill with velvet
  command: nextflow run ./tests/modules/shovill -entry test_shovill_velvet -c ./tests/config/nextflow.config -c ./tests/modules/shovill/nextflow.config
  tags:
    - shovill
  files:
    # MD5sum not reproducible (timestamp, contig order)
    - path: output/shovill/contigs.fa
    - path: output/shovill/contigs.LastGraph
    - path: output/shovill/shovill.corrections
    - path: output/shovill/shovill.log
    - path: output/shovill/velvet.fasta