name: bwamem2_index
description: Create BWA-mem2 index for reference genome
keywords:
    - index
    - fasta
    - genome
    - reference
tools:
    - bwa:
        description: |
            BWA-mem2 is a software package for mapping DNA sequences against
            a large reference genome, such as the human genome.
        homepage: https://github.com/bwa-mem2/bwa-mem2
        documentation: https://github.com/bwa-mem2/bwa-mem2#usage
input:
    - fasta:
        type: file
        description: Input genome fasta file
output:
    - index:
        type: file
        description: BWA genome index files
        pattern: "*.{0132,amb,ann,bwt.2bit.64,pac}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@maxulysse"