name: snpsites description: Rapidly extracts SNPs from a multi-FASTA alignment. keywords: - SNPs - invariant - constant tools: - snpsites: description: Rapidly extracts SNPs from a multi-FASTA alignment. homepage: https://www.sanger.ac.uk/tool/snp-sites/ documentation: https://github.com/sanger-pathogens/snp-sites licence: ["GPL-3.0-or-later"] input: - alignment: type: file description: fasta alignment file pattern: "*.{fasta,fas,fa,aln}" output: - versions: type: file description: File containing software versions pattern: "versions.yml" - fasta: type: file description: Variant fasta file pattern: "*.{fas}" - constant_sites: type: file description: Text file containing counts of constant sites pattern: "*.{sites.txt}" authors: - "@avantonder"