- name: spades test_spades_single_end
  command: nextflow run ./tests/modules/spades -entry test_spades_single_end -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa.gz
      md5sum: e5eab229363a906954a07df00e2495a6
    - path: output/spades/test.contigs.fa.gz
      md5sum: 64f6b339872b934138c6efd6baa445f4
    - path: output/spades/test.scaffolds.fa.gz
      md5sum: 64f6b339872b934138c6efd6baa445f4
    - path: output/spades/test.spades.log

- name: spades test_spades_paired_end
  command: nextflow run ./tests/modules/spades -entry test_spades_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa.gz
      md5sum: c8614fb69907ae832a1359a054af240f
    - path: output/spades/test.contigs.fa.gz
      md5sum: eab5165b3cda96c235aaa1388010cb27
    - path: output/spades/test.spades.log
    - path: output/spades/warnings.log

- name: spades test_spades_illumina_nanopore
  command: nextflow run ./tests/modules/spades -entry test_spades_illumina_nanopore -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa.gz
      md5sum: e438534f14e107f005efdd659adeba6a
    - path: output/spades/test.contigs.fa.gz
      md5sum: 027b0e54bfd8f4bc359e751e094133ef
    - path: output/spades/test.scaffolds.fa.gz
      md5sum: 027b0e54bfd8f4bc359e751e094133ef
    - path: output/spades/test.spades.log
    - path: output/spades/warnings.log

- name: spades test_spades_illumina_pacbio
  command: nextflow run ./tests/modules/spades -entry test_spades_illumina_pacbio -c ./tests/config/nextflow.config -c ./tests/modules/spades/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa.gz
      md5sum: e12aaf83d8dbfc313339b7636ba43447
    - path: output/spades/test.contigs.fa.gz
      md5sum: 78523f66d34ac4d5a4890f353c1a6ec6
    - path: output/spades/test.scaffolds.fa.gz
      md5sum: 78523f66d34ac4d5a4890f353c1a6ec6
    - path: output/spades/test.spades.log
    - path: output/spades/warnings.log