- name: manta convertinversion test_manta_convertinversion
  command: nextflow run ./tests/modules/manta/convertinversion -entry test_manta_convertinversion -c ./tests/config/nextflow.config  -c ./tests/modules/manta/convertinversion/nextflow.config
  tags:
    - manta
    - manta/convertinversion
  files:
    - path: output/manta/test.candidate_small_indels.vcf.gz
    - path: output/manta/test.candidate_small_indels.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.candidate_sv.vcf.gz
    - path: output/manta/test.candidate_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.tumor_sv.vcf.gz
    - path: output/manta/test.tumor_sv.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/manta/test.vcf.gz
    - path: output/manta/test.vcf.gz.tbi
      md5sum: e7180bb953d2bd657c420a5f76a7164d