- name: scramble clusteranalysis test_scramble_clusteranalysis
  command: nextflow run ./tests/modules/scramble/clusteranalysis -entry test_scramble_clusteranalysis -c ./tests/config/nextflow.config  -c ./tests/modules/scramble/clusteranalysis/nextflow.config
  tags:
    - scramble/clusteranalysis
    - scramble
  files:
    - path: output/scramble/test.clusters.txt
      md5sum: 9b2777a44bfbcff8fac1bf67c3985f1f
    - path: output/scramble/test_MEIs.txt
      md5sum: a14c40c7e5f3630defde68ae1de51bca

- name: scramble clusteranalysis test_scramble_clusteranalysis_fasta
  command: nextflow run ./tests/modules/scramble/clusteranalysis -entry test_scramble_clusteranalysis_fasta -c ./tests/config/nextflow.config  -c ./tests/modules/scramble/clusteranalysis/nextflow.config
  tags:
    - scramble/clusteranalysis
    - scramble
  files:
    - path: output/scramble/test.clusters.txt
      md5sum: 9b2777a44bfbcff8fac1bf67c3985f1f
    - path: output/scramble/test.vcf
      contains: [fileformat=VCFv4.2]
    - path: output/scramble/test_MEIs.txt
      md5sum: a14c40c7e5f3630defde68ae1de51bca
    - path: output/scramble/test_PredictedDeletions.txt
      md5sum: 1fa0d3d0a58fdf81bd259b3c71774ba8