name: graphmap2_index
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
keywords:
    - index
    - fasta
    - reference
tools:
    - graphmap2:
        description: |
            A versatile pairwise aligner for genomic and spliced nucleotide sequences.
        homepage: https://github.com/lbcb-sci/graphmap2
        documentation: https://github.com/lbcb-sci/graphmap2#graphmap2---a-highly-sensitive-and-accurate-mapper-for-long-error-prone-reads
        licence: ['MIT']
input:
    - fasta:
        type: file
        description: |
            Reference database in FASTA format.
output:
    - gmidx:
        type: file
        description: Graphmap2 fasta index in gmidx format
        pattern: "*.gmidx"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@yuukiiwa"
    - "@drpatelh"