name: nanoplot
description: Run NanoPlot on nanopore-sequenced reads
keywords:
    - quality control
    - qc
    - fastq
    - sequencing summary
    - nanopore
tools:
    - nanoplot:
        description: |
            NanoPlot is a tool for ploting long-read sequencing data and
            alignment.
        homepage: http://nanoplot.bioinf.be
        documentation: https://github.com/wdecoster/NanoPlot
input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
    - fastq:
        type: file
        description: |
            List of input basecalled-FastQ files.
    - summary_txt:
        type: file
        description: |
            List of sequenicng_summary.txt files from running basecalling.
output:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]
    - html:
        type: file
        description: NanoPlot report
        pattern: "*{.html}"
    - png:
        type: file
        description: Plots generated by NanoPlot
        pattern: "*{.png}"
    - txt:
        type: file
        description: Stats from NanoPlot
        pattern: "*{.txt}"
    - log:
        type: file
        description: log file of NanoPlot run
        pattern: "*{.log}"
    - version:
        type: file
        description: File containing software version
        pattern: "*.{version.txt}"
authors:
    - "@drpatelh"
    - "@yuukiiwa"