- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
  command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config
  tags:
    - gatk4_fastqtosam_single_end
    - gatk4
    - gatk4_fastqtosam
  files:
    - path: output/gatk4/test.bam
      md5sum: 4967100b2e4912c0e4ce0976d946bafb

- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
  command: nextflow run tests/software/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config
  tags:
    - gatk4_fastqtosam_paired_end
    - gatk4
    - gatk4_fastqtosam
  files:
    - path: output/gatk4/test.bam
      md5sum: 4967100b2e4912c0e4ce0976d946bafb