name: vcflib_vcfuniq description: List unique genotypes. Like GNU uniq, but for VCF records. Remove records which have the same position, ref, and alt as the previous record. keywords: - vcf - uniq - deduplicate tools: - vcflib: description: Command-line tools for manipulating VCF files homepage: https://github.com/vcflib/vcflib documentation: https://github.com/vcflib/vcflib#USAGE doi: "https://doi.org/10.1101/2021.05.21.445151" licence: ['MIT'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: Compressed VCF file pattern: "*.vcf.gz" - tbi: type: file description: Index of VCF file pattern: "*.vcf.gz.tbi" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - vcf: type: file description: Compressed VCF file pattern: "*.vcf.gz" authors: - "@drpatelh"