- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
  command: nextflow run ./tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/getpileupsummaries/nextflow.config
  tags:
    - gatk4
    - gatk4/getpileupsummaries
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469

- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
  command: nextflow run ./tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/getpileupsummaries/nextflow.config
  tags:
    - gatk4
    - gatk4/getpileupsummaries
  files:
    - path: output/gatk4/test.pileups.table
      md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469