- name: lofreq call test_lofreq_call
  command: nextflow run ./tests/modules/lofreq/call -entry test_lofreq_call -c ./tests/config/nextflow.config -c ./tests/modules/lofreq/call/nextflow.config
  tags:
    - lofreq
    - lofreq/call
  files:
    - path: output/lofreq/test.vcf.gz
      contains:
        [
          '##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">',
        ]