- name: fgbio fastqtobam test_fgbio_fastqtobam_paired_default
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_paired_default -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.bam
      md5sum: 83cd60e01e5ab90ea3729431ce401add

- name: fgbio fastqtobam test_fgbio_fastqtobam_paired_cram
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_paired_cram -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.cram

- name: fgbio fastqtobam test_fgbio_fastqtobam_paired_bam
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_paired_bam -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.bam
      md5sum: 83f879e3a302ca8a50dc9675be7a9216

- name: fgbio fastqtobam test_fgbio_fastqtobam_single
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_single -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.bam
      md5sum: c08fe1b035b972808f05128e37e8e669

- name: fgbio fastqtobam test_fgbio_fastqtobam_paired_umi
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_paired_umi -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.bam
      md5sum: 9510735554e5eff29244077a72075fb6

- name: fgbio fastqtobam test_fgbio_fastqtobam_paired_custom_samplename
  command: nextflow run ./tests/modules/fgbio/fastqtobam -entry test_fgbio_fastqtobam_paired_custom_samplename -c ./tests/config/nextflow.config  -c ./tests/modules/fgbio/fastqtobam/nextflow.config
  tags:
    - fgbio
    - fgbio/fastqtobam
  files:
    - path: output/fgbio/test.bam
      md5sum: ab8d7d2d9c1559b19a501d120296ebe0