- name: nextgenmap test_nextgenmap_single
  command: nextflow run ./tests/modules/nextgenmap -entry test_nextgenmap_single -c ./tests/config/nextflow.config  -c ./tests/modules/nextgenmap/nextflow.config
  tags:
    - nextgenmap
  files:
    - path: output/nextgenmap/test.bam
      md5sum: ada069bc5c670ffee23871f3ca525d0a

- name: nextgenmap test_bwamem2_mem_paired_end
  command: nextflow run ./tests/modules/nextgenmap -entry test_bwamem2_mem_paired_end -c ./tests/config/nextflow.config  -c ./tests/modules/nextgenmap/nextflow.config
  tags:
    - nextgenmap
  files:
    - path: output/nextgenmap/test.bam
      md5sum: fa76167e236cf1aabdafdbb0632253cd