- name: samtools view test_samtools_view
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: e6a9285be7b1c616dc4e17679fce5f1e

- name: samtools view test_samtools_view_cram
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_cram -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.cram

- name: samtools view test_samtools_view_convert
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_convert -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: 4f4a97da17db79c78b1912da3cdc1d8f

- name: samtools view test_samtools_view_index
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_index -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: b2d2482cea94adfc9628473792b0d215
    - path: output/samtools/test.bam.csi
      md5sum: 343a2085b436cab2123147dafd255607

- name: samtools view test_samtools_view_filter
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_filter -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: d8e20876423cb1123a559e4347115249
    - path: output/samtools/test.bam.csi
      md5sum: b1d688576e59529271333aa50b3ad3ae

- name: samtools view test_samtools_view_stubs
  command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_stubs -c ./tests/config/nextflow.config  -c ./tests/modules/samtools/view/nextflow.config
  tags:
    - samtools/view
    - samtools
  files:
    - path: output/samtools/test.bam
      md5sum: e6a9285be7b1c616dc4e17679fce5f1e