- name: cat fastq single-end
  command: nextflow run ./tests/software/cat/fastq -entry test_cat_fastq_single_end -c tests/config/nextflow.config
  tags:
    - cat
    - cat_fastq
    - cat_fastqc_single_end
  files:
    - path: ./output/merged_fastq/test.merged.fastq.gz
      md5sum: 59f6dbe193741bb40f498f254aeb2e99

- name: cat fastq fastqc_paired_end
  command: nextflow run ./tests/software/cat/fastq -entry test_cat_fastq_paired_end -c tests/config/nextflow.config
  tags:
    - cat
    - cat_fastq
    - cat_fastqc_paired_end
  files:
    - path: ./output/merged_fastq/test_2.merged.fastq.gz
      md5sum: d2b1a836eef1058738ecab36c907c5ba
    - path: ./output/merged_fastq/test_1.merged.fastq.gz
      md5sum: 59f6dbe193741bb40f498f254aeb2e99