name: last_mafswap description: Reorder alignments in a MAF file keywords: - LAST - reorder - alignment - MAF tools: - last: description: LAST finds & aligns related regions of sequences. homepage: https://gitlab.com/mcfrith/last documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/ tool_dev_url: https://gitlab.com/mcfrith/last doi: "" licence: ['GPL-3.0-or-later'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - maf: type: file description: Multiple Aligment Format (MAF) file, compressed with gzip pattern: "*.{maf.gz}" output: - maf: type: file description: Multiple Aligment Format (MAF) file, compressed with gzip pattern: "*.{maf.gz}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@charles-plessy"