- name: unicycler test_unicycler_single_end
  command: nextflow run ./tests/modules/unicycler -entry test_unicycler_single_end -c ./tests/config/nextflow.config -c ./tests/modules/unicycler/nextflow.config
  tags:
    - unicycler
  files:
    - path: output/unicycler/test.assembly.gfa.gz
    - path: output/unicycler/test.scaffolds.fa.gz
    - path: output/unicycler/test.unicycler.log
      contains:
        - "Assembly complete"

- name: unicycler test_unicycler_paired_end
  command: nextflow run ./tests/modules/unicycler -entry test_unicycler_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/unicycler/nextflow.config
  tags:
    - unicycler
  files:
    - path: output/unicycler/test.assembly.gfa.gz
    - path: output/unicycler/test.scaffolds.fa.gz
    - path: output/unicycler/test.unicycler.log
      contains:
        - "Assembly complete"

- name: unicycler test_unicycler_shortreads_longreads
  command: nextflow run ./tests/modules/unicycler -entry test_unicycler_shortreads_longreads -c ./tests/config/nextflow.config -c ./tests/modules/unicycler/nextflow.config
  tags:
    - unicycler
  files:
    - path: output/unicycler/test.assembly.gfa.gz
    - path: output/unicycler/test.scaffolds.fa.gz
    - path: output/unicycler/test.unicycler.log
      contains:
        - "Assembly complete"