params {
    outdir = "output/"
    publish_dir_mode = "copy"
    enable_conda = false
    singularity_pull_docker_container = false
}

if("$PROFILE" == "docker") {
    docker.enabled = true
    docker.runOptions = '-u \$(id -u):\$(id -g)'
} else if ("$PROFILE" == "singularity") {
    singularity.enabled = true
    singularity.autoMounts = true
} else if ("$PROFILE" == "conda") {
    params.enable_conda = true
}