- name: bismark deduplicate test workflow
  command: nextflow run ./tests/modules/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/deduplicate
  files:
    - path: output/bismark/test.paired_end.methylated.deduplicated.bam
      md5sum: 82213a207048bcb5d8cc1cee92703a29
    - path: output/bismark/test.paired_end.methylated.deduplication_report.txt
      md5sum: 86aaf87bac9ccdc3cc83628f20b902dc