- name: snapaligner align test_snapaligner_single
  command: nextflow run ./tests/modules/snapaligner/align -entry test_snapaligner_single -c ./tests/config/nextflow.config  -c ./tests/modules/snapaligner/align/nextflow.config
  tags:
    - snapaligner/align
    - snapaligner
  files:
    - path: output/snapaligner/test.bam
      md5sum: 9958e511fe759012cd11b7ef1f097639
    - path: output/snapaligner/test.bam.bai
      md5sum: f180c68a77445b317a22e3f1d6e6e114

- name: snapaligner align test_snapaligner_paired
  command: nextflow run ./tests/modules/snapaligner/align -entry test_snapaligner_paired -c ./tests/config/nextflow.config  -c ./tests/modules/snapaligner/align/nextflow.config
  tags:
    - snapaligner/align
    - snapaligner
  files:
    - path: output/snapaligner/test.bam
      md5sum: cf656d5f18afa6a97825a685e1b2b141
    - path: output/snapaligner/test.bam.bai
      md5sum: fa2226d7f5b0b4b15d014332f94a8b84