def VERSION = '377' // Version information not provided by tool on CLI process UCSC_BEDCLIP { tag "$meta.id" label 'process_medium' conda (params.enable_conda ? "bioconda::ucsc-bedclip=377" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ucsc-bedclip:377--h0b8a92a_2' : 'quay.io/biocontainers/ucsc-bedclip:377--h0b8a92a_2' }" input: tuple val(meta), path(bedgraph) path sizes output: tuple val(meta), path("*.bedGraph"), emit: bedgraph path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' def prefix = task.ext.prefix ?: "${meta.id}" """ bedClip \\ $bedgraph \\ $sizes \\ ${prefix}.bedGraph cat <<-END_VERSIONS > versions.yml "${task.process}": ucsc: $VERSION END_VERSIONS """ }