#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { BEDTOOLS_MASKFASTA } from '../../../../software/bedtools/maskfasta/main.nf' addParams( options: [:] )

workflow test_bedtools_maskfasta {
    def bed  =  [ [ id:'test'],
                  file("${launchDir}/tests/data/genomics/sarscov2/bed/test.bed", checkIfExists: true) ]
    def fasta = [ file("${launchDir}/tests/data/genomics/sarscov2/fasta/test_genome.fasta", checkIfExists: true) ]

    BEDTOOLS_MASKFASTA( bed, fasta )
}