- name: Run bwameth single-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth_align
  files:
    - path: output/test_single_end/test.bam
      md5sum: df75d1d633105d77039634de5cf00c1a

- name: Run bwameth paired-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth_align
  files:
    - path: output/test_paired_end/test.bam
      md5sum: e359417da97fe092160834091a7fdc0e