name: kronatools_ktimporttaxonomy description: KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot. keywords: - plot - taxonomy - interactive - html - visualisation - krona chart tools: - kronatools: description: Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. homepage: https://github.com/marbl/Krona/wiki/KronaTools documentation: http://manpages.ubuntu.com/manpages/impish/man1/ktImportTaxonomy.1.html tool_dev_url: doi: https://doi.org/10.1186/1471-2105-12-385 licence: input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test'] - database: type: path description: "Path to the taxonomy database downloaded by kronatools/kronadb" - report: type: file description: "A tab-delimited file with taxonomy IDs and (optionally) query IDs, magnitudes, and scores. Query IDs are taken from column 1, taxonomy IDs from column 2, and scores from column 3. Lines beginning with # will be ignored." pattern: "*.{tsv}" output: - versions: type: file description: File containing software versions pattern: "versions.yml" - html: type: file description: A html file containing an interactive krona plot. pattern: "*.{html}" authors: - "@mjakobs"