- name: freebayes test_freebayes
  command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_bed
  command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_cram
  command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_somatic
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz

- name: freebayes test_freebayes_somatic_cram_intervals
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz