- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: 5fdcf1728cf98985ce31c038eb24e05c

- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: 5fdcf1728cf98985ce31c038eb24e05c

- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: 5fdcf1728cf98985ce31c038eb24e05c
    - path: output/gatk4/test.segmentation.table
      md5sum: 91f28bfe4727a3256810927fc5eba92f