#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { SEQSERO2 } from '../../../modules/seqsero2/main.nf' addParams( options: [args: '-m k -t 4'] )

workflow test_seqsero2 {
    
    input = [ [ id:'test', single_end:false ], // meta map
              file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]

    SEQSERO2 ( input )
}