name: mash_sketch description: Creates vastly reduced representations of sequences using MinHash keywords: - mash/sketch tools: - mash: description: Fast sequence distance estimator that uses MinHash homepage: https://github.com/marbl/Mash documentation: https://mash.readthedocs.io/en/latest/sketches.html tool_dev_url: https://github.com/marbl/Mash doi: "10.1186/s13059-016-0997-x" licence: ['https://github.com/marbl/Mash/blob/master/LICENSE.txt'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - reads: type: file description: List of input paired-end FastQ files output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - version: type: file description: Sketch output pattern: "*.{mash}" - stats: type: file description: Sketch statistics pattern: "*.{mash_stats}" authors: - "@thanhleviet"