- name: Run bwameth single-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_single_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth/align
  files:
    - path: output/test_single_end/test.bam

- name: Run bwameth paired-end test workflow
  command: nextflow run ./tests/software/bwameth/align -entry test_bwameth_align_paired_end -c tests/config/nextflow.config
  tags:
    - bwameth
    - bwameth/align
  files:
    - path: output/test_paired_end/test.bam