name: mafft description: Multiple sequence alignment using MAFFT keywords: - msa - multiple sequence alignment tools: - mafft: description: Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform homepage: https://mafft.cbrc.jp/alignment/software/ documentation: https://mafft.cbrc.jp/alignment/software/manual/manual.html tool_dev_url: https://mafft.cbrc.jp/alignment/software/source.html doi: "10.1093/nar/gkf436" licence: ["BSD"] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - fasta: type: file description: FASTA file containing the sequences to align pattern: "*.{fa,fasta}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - fas: type: file description: Aligned sequences in FASTA format pattern: "*.{fas}" authors: - "@MillironX"