name: bcftools_isec description: Apply set operations to VCF files keywords: - variant calling - intersect - union - complement - VCF tools: - isec: description: | Computes intersections, unions and complements of VCF files. homepage: http://samtools.github.io/bcftools/bcftools.html documentation: http://www.htslib.org/doc/bcftools.html doi: 10.1093/bioinformatics/btp352 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcfs: type: files description: | List containing 2 or more vcf files e.g. [ 'file1.vcf', 'file2.vcf' ] - tbis: type: files description: | List containing the tbi index files corresponding to the vcfs input files e.g. [ 'file1.vcf.tbi', 'file2.vcf.tbi' ] output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - results: type: directory description: Folder containing the set operations results perform on the vcf files pattern: "${prefix}" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@joseespinosa" - "@drpatelh"