name: bowtie_build
description: Create bowtie index for reference genome
keywords:
    - index
    - fasta
    - genome
    - reference
tools:
    - bowtie:
          description: |
              bowtie is a software package for mapping DNA sequences against
              a large reference genome, such as the human genome.
          homepage: http://bowtie-bio.sourceforge.net/index.shtml
          documentation: http://bowtie-bio.sourceforge.net/manual.shtml
          arxiv: arXiv:1303.3997
          licence: ['Artistic-2.0']
input:
    - fasta:
          type: file
          description: Input genome fasta file
output:
    - index:
          type: file
          description: Bowtie genome index files
          pattern: "*.ebwt"
    - versions:
          type: file
          description: File containing software versions
          pattern: "versions.yml"
authors:
    - "@kevinmenden"
    - "@drpatelh"