- name: biscuit epiread test_biscuit_epiread_nosnp
  command: nextflow run tests/modules/biscuit/epiread -entry test_biscuit_epiread_nosnp -c tests/config/nextflow.config
  tags:
    - biscuit
    - biscuit/epiread
  files:
    - path: output/biscuit/BiscuitIndex/genome.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.amb
      md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.ann
      md5sum: c32e11f6c859f166c7525a9c1d583567
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.pac
      md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.bwt
      md5sum: a11bc31775f7b7a4f9cd3bc4f981661a
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.sa
      md5sum: 9c9e07fa1c75ef32d764274579c89b08
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.bwt
      md5sum: 62eb83cd557a47b59589713d98024fc2
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.sa
      md5sum: 55bcd97d7059bf73dc0d221e36e8e901
    - path: output/biscuit/test.bed.gz
      md5sum: dbb30b59f4ef6fdfdee38630225c0574
    - path: output/biscuit/versions.yml
      md5sum: 674a77ac5ca8f4b42d30e58e30c3a9af

- name: biscuit epiread test_biscuit_epiread_snp
  command: nextflow run tests/modules/biscuit/epiread -entry test_biscuit_epiread_snp -c tests/config/nextflow.config
  tags:
    - biscuit
    - biscuit/epiread
  files:
    - path: output/biscuit/BiscuitIndex/genome.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.amb
      md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.ann
      md5sum: c32e11f6c859f166c7525a9c1d583567
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.pac
      md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.bwt
      md5sum: a11bc31775f7b7a4f9cd3bc4f981661a
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.sa
      md5sum: 9c9e07fa1c75ef32d764274579c89b08
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.bwt
      md5sum: 62eb83cd557a47b59589713d98024fc2
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.sa
      md5sum: 55bcd97d7059bf73dc0d221e36e8e901
    - path: output/biscuit/test.bed.gz
      md5sum: a29fea6ad74453ec94f8220747dab906
    - path: output/biscuit/versions.yml
      md5sum: f2f7c4ff3c6a135b1c8a3aff24a44d81

- name: biscuit epiread test_biscuit_epiread_snp_decompress
  command: nextflow run tests/modules/biscuit/epiread -entry test_biscuit_epiread_snp_decompress -c tests/config/nextflow.config
  tags:
    - biscuit
    - biscuit/epiread
  files:
    - path: output/biscuit/BiscuitIndex/genome.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.amb
      md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.ann
      md5sum: c32e11f6c859f166c7525a9c1d583567
    - path: output/biscuit/BiscuitIndex/genome.fasta.bis.pac
      md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.bwt
      md5sum: a11bc31775f7b7a4f9cd3bc4f981661a
    - path: output/biscuit/BiscuitIndex/genome.fasta.dau.sa
      md5sum: 9c9e07fa1c75ef32d764274579c89b08
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.bwt
      md5sum: 62eb83cd557a47b59589713d98024fc2
    - path: output/biscuit/BiscuitIndex/genome.fasta.par.sa
      md5sum: 55bcd97d7059bf73dc0d221e36e8e901
    - path: output/biscuit/test.bed.gz
      md5sum: a29fea6ad74453ec94f8220747dab906
    - path: output/biscuit/versions.yml
      md5sum: cb0258ebf4e1a731a4310ec17c3dc442