name: bbmap_index description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode. keywords: - mapping - index - fasta tools: - bbmap: description: BBMap is a short read aligner, as well as various other bioinformatic tools. homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/ documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/ tool_dev_url: None doi: "" licence: ['UC-LBL license (see package)'] input: - fasta: type: fasta description: fasta formatted file with nucleotide sequences pattern: "*.{fna,fa,fasta}" output: - version: type: file description: File containing software version pattern: "*.{version.txt}" - db: type: directory description: Directory with index files pattern: "ref" authors: - "@daniellundin"