name: bowtie2_build description: Builds bowtie index for reference genome keywords: - build - index - fasta - genome - reference tools: - bowtie2: description: | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml documentation: http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml doi: 10.1038/nmeth.1923 input: - fasta: type: file description: Input genome fasta file output: - index: type: file description: Bowtie2 genome index files pattern: "*.bt2" - version: type: file description: File containing software version pattern: "*.{version.txt}" authors: - "@joseespinosa" - "@drpatelh"