name: hisat2_extractsplicesites description: Extracts splicing sites from a gtf files keywords: - splicing - gtf - genome - reference tools: - hisat2: description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. homepage: https://daehwankimlab.github.io/hisat2/ documentation: https://daehwankimlab.github.io/hisat2/manual/ doi: "10.1038/s41587-019-0201-4" licence: ['MIT'] input: - gtf: type: file description: Reference gtf annotation file pattern: "*.{gtf}" output: - version: type: file description: File containing software version pattern: "*.{version.txt}" - splicesites: type: file description: Splices sites in gtf file pattern: "*.{splice_sites.txt}" authors: - "@ntoda03"