#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { DIAMOND_MAKEDB } from '../../../../modules/diamond/makedb/main.nf' addParams( options: [:]                           )
include { DIAMOND_BLASTP } from '../../../../modules/diamond/blastp/main.nf' addParams( options: [ suffix: '.diamond_blastp' ] )

workflow test_diamond_blastp {

    db = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
    fasta = [ file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]

    DIAMOND_MAKEDB ( db )
    DIAMOND_BLASTP ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db )
}