- name: spades single end
  command: nextflow run ./tests/modules/spades -entry test_spades_single_end -c tests/config/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa
      md5sum: a995d1d413031534180d2b3b715fa921
    - path: output/spades/test.contigs.fa
      md5sum: 65ba6a517c152dbe219bf4b5b92bdad7
    - path: output/spades/test.scaffolds.fa
      md5sum: 65ba6a517c152dbe219bf4b5b92bdad7
    - path: output/spades/test.spades.log

- name: spades paired end
  command: nextflow run ./tests/modules/spades -entry test_spades_paired_end -c tests/config/nextflow.config
  tags:
    - spades
  files:
    - path: output/spades/test.assembly.gfa
      md5sum: bb053ef4e9250829c980ca17fbdbe3e9
    - path: output/spades/test.contigs.fa
      md5sum: 4476d409da70d9f7fc2aa8f25bbaf7fd
    - path: output/spades/test.spades.log