name: bcftools_norm description: Normalize VCF file keywords: - normalize - norm - variant calling - VCF tools: - norm: description: | Normalize VCF files. homepage: http://samtools.github.io/bcftools/bcftools.html documentation: http://www.htslib.org/doc/bcftools.html doi: 10.1093/bioinformatics/btp352 input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: | The vcf file to be normalized e.g. 'file1.vcf' - fasta: type: file description: FASTA reference file pattern: "*.{fasta,fa}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - vcf: type: file description: VCF normalized output file pattern: "*.{vcf.gz}" - versions: type: file description: File containing software versions pattern: "versions.yml" authors: - "@abhi18av"