name: cooler_dump description: Dump a cooler’s data to a text stream. keywords: - dump tools: - cooler: description: Sparse binary format for genomic interaction matrices homepage: https://cooler.readthedocs.io/en/latest/index.html documentation: https://cooler.readthedocs.io/en/latest/index.html tool_dev_url: https://github.com/open2c/cooler doi: "10.1093/bioinformatics/btz540" licence: ['BSD-3-clause'] input: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - cool: type: file description: Path to COOL file pattern: "*.{cool,mcool}" output: - meta: type: map description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - versions: type: file description: File containing software versions pattern: "versions.yml" - bedpe: type: file description: Output text file pattern: "*.bedpe" authors: - "@jianhong"