- name: gatk4 applybqsr test_gatk4_applybqsr
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: 87a2eabae2b7b41574f966612b5addae

- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: 9c015d3c1dbd9eee793b7386f432b6aa

- name: gatk4 applybqsr test_gatk4_applybqsr_cram
  command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config
  tags:
    - gatk4/applybqsr
    - gatk4
  files:
    - path: output/gatk4/test.bam
      md5sum: 02f84815fdbc99c21c8d42ebdcabbbf7