- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: ff348a26dd09404239a7ed0da7d98874

- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: ff348a26dd09404239a7ed0da7d98874

- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
  command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config
  tags:
    - gatk4/calculatecontamination
    - gatk4
  files:
    - path: output/gatk4/test.contamination.table
      md5sum: ff348a26dd09404239a7ed0da7d98874
    - path: output/gatk4/test.segmentation.table
      md5sum: 478cb4f69ec001944b9cd0e7e4de01ef