- name: gatk indelrealigner test_gatk_indelrealigner
  command: nextflow run ./tests/modules/gatk/indelrealigner -entry test_gatk_indelrealigner -c ./tests/config/nextflow.config  -c ./tests/modules/gatk/indelrealigner/nextflow.config
  tags:
    - gatk/indelrealigner
    - gatk
  files:
    - path: output/gatk/test.realigned.bai
      md5sum: 85a67df8827fe426e7f3a458134c0551
    - path: output/gatk/test.realigned.bam
      md5sum: ea1df6f7fcafc408fae4dc1574813d8a
    - path: output/gatk/test.realigned.intervals
      md5sum: 7aa7a1b235a510e6591e262382086bf8