- name: yara mapper test_yara_single_end
  command: nextflow run ./tests/modules/yara/mapper -entry test_yara_single_end -c ./tests/config/nextflow.config -c ./tests/modules/yara/mapper/nextflow.config
  tags:
    - yara/mapper
    - yara
  files:
    - path: output/yara/test.mapped.bam
    - path: output/yara/test.mapped.bam.bai
    - path: output/yara/yara/yara.txt.size
      md5sum: 063987b3c3f747be7d2b8043c9d91000
    - path: output/yara/yara/yara.lf.drs
      md5sum: 55a54008ad1ba589aa210d2629c1df41
    - path: output/yara/yara/yara.lf.pst
      md5sum: e8daba34298e99e42942435286f9b3f0
    - path: output/yara/yara/yara.sa.len
      md5sum: 45677f66c28c79c02250ceb8b58645e8
    - path: output/yara/yara/yara.rid.concat
      md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5
    - path: output/yara/yara/yara.txt.concat
      md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0
    - path: output/yara/yara/yara.sa.val
      md5sum: ce57cc82e2d3ae7b9824210f54168ce9
    - path: output/yara/yara/yara.sa.ind
      md5sum: 464314583efb5f07260b0efecc29a1ce
    - path: output/yara/yara/yara.rid.limits
      md5sum: 8b814661f30a0c9e350bfbcb454930ce
    - path: output/yara/yara/yara.lf.drp
      md5sum: 3ef99a87a4e44513f46d42f4261f7842
    - path: output/yara/yara/yara.txt.limits
      md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
    - path: output/yara/yara/yara.lf.drv
      md5sum: cf6408307fe9fd7f99c33f521bf95550
    - path: output/yara/yara/yara.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6

- name: yara mapper test_yara_paired_end
  command: nextflow run ./tests/modules/yara/mapper -entry test_yara_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/yara/mapper/nextflow.config
  tags:
    - yara/mapper
    - yara
  files:
    - path: output/yara/test_2.mapped.bam
    - path: output/yara/test_2.mapped.bam.bai
    - path: output/yara/test_1.mapped.bam
    - path: output/yara/test_1.mapped.bam.bai
    - path: output/yara/yara/yara.txt.size
      md5sum: 063987b3c3f747be7d2b8043c9d91000
    - path: output/yara/yara/yara.lf.drs
      md5sum: 55a54008ad1ba589aa210d2629c1df41
    - path: output/yara/yara/yara.lf.pst
      md5sum: e8daba34298e99e42942435286f9b3f0
    - path: output/yara/yara/yara.sa.len
      md5sum: 45677f66c28c79c02250ceb8b58645e8
    - path: output/yara/yara/yara.rid.concat
      md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5
    - path: output/yara/yara/yara.txt.concat
      md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0
    - path: output/yara/yara/yara.sa.val
      md5sum: ce57cc82e2d3ae7b9824210f54168ce9
    - path: output/yara/yara/yara.sa.ind
      md5sum: 464314583efb5f07260b0efecc29a1ce
    - path: output/yara/yara/yara.rid.limits
      md5sum: 8b814661f30a0c9e350bfbcb454930ce
    - path: output/yara/yara/yara.lf.drp
      md5sum: 3ef99a87a4e44513f46d42f4261f7842
    - path: output/yara/yara/yara.txt.limits
      md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
    - path: output/yara/yara/yara.lf.drv
      md5sum: cf6408307fe9fd7f99c33f521bf95550
    - path: output/yara/yara/yara.fasta
      md5sum: 6e9fe4042a72f2345f644f239272b7e6