name: assemblyscan
description: Assembly summary statistics in JSON format
keywords:
  - assembly
  - statistics
tools:
  - assemblyscan:
      description: Assembly summary statistics in JSON format
      homepage: https://github.com/rpetit3/assembly-scan
      documentation: https://github.com/rpetit3/assembly-scan
      tool_dev_url: https://github.com/rpetit3/assembly-scan
      doi: ""
      licence: ["MIT"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - assembly:
      type: file
      description: FASTA file for a given assembly
      pattern: "*.fasta"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - json:
      type: file
      description: Assembly statistics in JSON format
      pattern: "*.json"

authors:
  - "@sateeshperi"
  - "@mjcipriano"