- name: ascat test_ascat
  command: nextflow run tests/modules/ascat -entry test_ascat -c tests/config/nextflow.config -stub-run
  tags:
    - ascat
  files:
    - path: output/ascat/test.after_correction.gc_rt.test.tumour.germline.png
    - path: output/ascat/test.after_correction.gc_rt.test.tumour.tumour.png
    - path: output/ascat/test.before_correction.test.tumour.germline.png
    - path: output/ascat/test.before_correction.test.tumour.tumour.png
    - path: output/ascat/test.cnvs.txt
    - path: output/ascat/test.metrics.txt
    - path: output/ascat/test.normal_alleleFrequencies_chr21.txt
    - path: output/ascat/test.normal_alleleFrequencies_chr22.txt
    - path: output/ascat/test.purityploidy.txt
    - path: output/ascat/test.segments.txt
    - path: output/ascat/test.tumour.ASPCF.png
    - path: output/ascat/test.tumour.sunrise.png
    - path: output/ascat/test.tumour_alleleFrequencies_chr21.txt
    - path: output/ascat/test.tumour_alleleFrequencies_chr22.txt
    - path: output/ascat/test.tumour_normalBAF.txt
    - path: output/ascat/test.tumour_normalLogR.txt
    - path: output/ascat/test.tumour_tumourBAF.txt
    - path: output/ascat/test.tumour_tumourLogR.txt