- name: gatk4 printsvevidence test_gatk4_printsvevidence
  command: nextflow run ./tests/modules/gatk4/printsvevidence -entry test_gatk4_printsvevidence -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/printsvevidence/nextflow.config
  tags:
    - gatk4/printsvevidence
    - gatk4
  files:
    - path: output/gatk4/normal.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/normal.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/normal.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/normal.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5
    - path: output/gatk4/normal_print.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/normal_print.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/normal_print.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/normal_print.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5
    - path: output/gatk4/tumour.pe.txt.gz
      md5sum: 11fb8aeeea29370d9d1b49448456da81
    - path: output/gatk4/tumour.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/tumour.sr.txt.gz
      md5sum: 3ce47a0e0abac1c2b291e73a2b57cba0
    - path: output/gatk4/tumour.sr.txt.gz.tbi
      md5sum: f2105270ba79ed645bac9842be79f411
    - path: output/gatk4/tumour_print.pe.txt.gz
      md5sum: 11fb8aeeea29370d9d1b49448456da81
    - path: output/gatk4/tumour_print.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/tumour_print.sr.txt.gz
      md5sum: 3ce47a0e0abac1c2b291e73a2b57cba0
    - path: output/gatk4/tumour_print.sr.txt.gz.tbi
      md5sum: f2105270ba79ed645bac9842be79f411

- name: gatk4 printsvevidence test_gatk4_printsvevidence_bed_no_fasta
  command: nextflow run ./tests/modules/gatk4/printsvevidence -entry test_gatk4_printsvevidence_bed_no_fasta -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/printsvevidence/nextflow.config
  tags:
    - gatk4/printsvevidence
    - gatk4
  files:
    - path: output/gatk4/normal.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/normal.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/normal.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/normal.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5
    - path: output/gatk4/normal_print.pe.txt.gz
      md5sum: 19f13dd0408204590b40239d14acbdde
    - path: output/gatk4/normal_print.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/normal_print.sr.txt.gz
      md5sum: fb9ce52193a0db3a084890bd6bbf6a64
    - path: output/gatk4/normal_print.sr.txt.gz.tbi
      md5sum: 3e7b04492c53765e3c84d76b59e1f2c5
    - path: output/gatk4/tumour.pe.txt.gz
      md5sum: 11fb8aeeea29370d9d1b49448456da81
    - path: output/gatk4/tumour.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/tumour.sr.txt.gz
      md5sum: 3ce47a0e0abac1c2b291e73a2b57cba0
    - path: output/gatk4/tumour.sr.txt.gz.tbi
      md5sum: f2105270ba79ed645bac9842be79f411
    - path: output/gatk4/tumour_print.pe.txt.gz
      md5sum: 11fb8aeeea29370d9d1b49448456da81
    - path: output/gatk4/tumour_print.pe.txt.gz.tbi
      md5sum: 876170d2727a467263cbacecbd9979ee
    - path: output/gatk4/tumour_print.sr.txt.gz
      md5sum: 3ce47a0e0abac1c2b291e73a2b57cba0
    - path: output/gatk4/tumour_print.sr.txt.gz.tbi
      md5sum: f2105270ba79ed645bac9842be79f411