- name: multiqc test_multiqc
  command: nextflow run ./tests/modules/multiqc -entry test_multiqc -c ./tests/config/nextflow.config  -c ./tests/modules/multiqc/nextflow.config
  tags:
    - multiqc
  files:
    - path: output/multiqc/multiqc_data/multiqc.log
      contains: ["MultiQC complete"]
    - path: output/multiqc/multiqc_data/multiqc_citations.txt
      contains: ["10.1093/bioinformatics/btw354"]
    - path: output/multiqc/multiqc_data/multiqc_data.json
      contains: ["report_data_sources"]
    - path: output/multiqc/multiqc_report.html
      contains: ["Abandon hope all ye who enter here.."]

- name: multiqc test_multiqc_fn_collision
  command: nextflow run ./tests/modules/multiqc -entry test_multiqc_fn_collision -c ./tests/config/nextflow.config  -c ./tests/modules/multiqc/nextflow.config
  tags:
    - multiqc
  files:
    - path: output/multiqc/multiqc_data/multiqc.log
      contains: ["MultiQC complete"]
    - path: output/multiqc/multiqc_data/multiqc_citations.txt
      contains: ["10.1093/bioinformatics/btw354"]
    - path: output/multiqc/multiqc_data/multiqc_data.json
      contains: ["report_data_sources"]
    - path: output/multiqc/multiqc_report.html
      contains: ["Abandon hope all ye who enter here.."]

- name: multiqc test_multiqc_config
  command: nextflow run ./tests/modules/multiqc -entry test_multiqc_config -c ./tests/config/nextflow.config  -c ./tests/modules/multiqc/nextflow.config
  tags:
    - multiqc
  files:
    - path: output/multiqc/multiqc_data/multiqc.log
      contains: ["MultiQC complete"]
    - path: output/multiqc/multiqc_data/multiqc_citations.txt
      contains: ["10.1093/bioinformatics/btw354"]
    - path: output/multiqc/multiqc_data/multiqc_data.json
      contains: ["report_data_sources"]
    - path: output/multiqc/multiqc_report.html
      contains: ["Abandon hope all ye who enter here.."]